background white
zoom 300
#1. определение полярных контактов белка с 2'-дезоксирибозы 
restrict none
select within (3.5, pol_prot) and pol_des 
cpk
label %n %r %a %c
color label black

select within (3.5, pol_des) and pol_prot
cpk
label %n %r %a %c
color label black

echo polar contacts between atoms of protein and deoxyribose
pause



#2. Определим неполярные контакты белка с остатками 2'-дезоксирибозы
restrict none
select within (4.5, nonp_prot) and nonp_des 
cpk
color blue
label %n %r %a %c

 
select within (4.5, nonp_des) and nonp_prot 
cpk
label %n %r %a %c

echo hydrophobic contact between atoms of protein and deoxyribose
pause


#3. Определим полярные контакты белка с остатками фосфорной кислоты
restrict none
select within (3.5, pol_prot ) and pol_ph

cpk
label %n %r %a %c



select within (3.5, pol_ph) and pol_prot 

cpk
label %n %r %a %c



echo polar contacts between atoms of protein and phosphate
pause

#4. Определим полярные контакты белка с остатками азотистых оснований со стороны большой бороздки
restrict none
select within (3.5, pol_prot) and pol_mjg
cpk
label %n %r %a %c
select within (3.5, pol_mjg) and pol_prot
cpk
label %n %r %a %c

echo polar contacts between atoms of major groove and atoms of protein
pause


#5. Определим неполярные контакты белка с остатками азотистых оснований со стороны большой бороздки
restrict none
select within (4.5, nonp_prot) and nonp_mjg
cpk
color blue
label %n %r %a %c

select within (4.5, nonp_mjg) and nonp_prot
cpk
label %n %r %a %c
echo hydrophobic contact between atoms of major groove and atoms of protein
pause

#6. Определим полярные контакты белка с остатками азотистых оснований со стороны малой бороздки
restrict none
select within (3.5, pol_prot) and pol_mig
cpk
color blue
label %n %r %a %c

select within (3.5, pol_mig) and pol_prot
cpk
label %n %r %a %c
echo polar contacts between atoms of minor groove and atoms of protein
pause

#7. Определим неполярные контакты белка с остатками азотистых оснований со стороны малой бороздки
restrict none
select within (4.5, nonp_prot) and nonp_mig
cpk
color blue

label %n %r %a %c


select within (4.5, nonp_mig) and nonp_prot
cpk
label %n %r %a %c
echo hydrophobic contact between atoms of minor groove and atoms of protein